CLC Main Workbench (was CLC Combined Workbench) aggregates all features of CLC RNA Workbench, CLC Protein Workbench, and CLC Gene Workbench in one integrated software package.
CLC Combined Workbench creates a software environment enabling users to make a large number of advanced protein sequence analyses, combined with smooth data management, and excellent graphical viewing and output options.
Version 7.6.3:
New features and improvements
- Batching on selected elements is now possible: it used to be restricted to selected folders.
- One can now select "EST" as database when using the Search for Sequences at NCBI tool.
- The Hierarchical Clustering of Samples tool can now be executed as part of workflows and on the server.
- Improved memory management when handling large report elements.
- Tooltips on leaves of phylogenetic trees now display a description of the attached sequence.
- Numbers are no longer appended to the names of Workflow elements when creating a copy of a Workflow using "Open Copy of Workflow".
- Metadata Management. Keep track of input files and import meta information for your samples.
Bug fixes
- Fixed a rare occurring issue where the Workbench would display an error message when installing a 3rd party licensed plugin.
- Fixed an issue where selecting an entry in a Blast results table could highlight the wrong alignment in the Blast editor if the table had been filtered or sorted.
- Fixed an issue where clicking on an annotation in the Design Primers editor could give rise to an error message.
- Fixed an issue where annotations that spanned the ends of a circular sequence would be incorrectly placed in the Circular Sequence View.
- Fixed a bug that caused the workbench to freeze if certain sequences were displayed in circular view with radial rendering of labels.
- Fixed exported reports having the wrong author in certain situations.
- Fixed an issue whereby Create Box Plot and Principal Component Analysis could sometimes be run with illegal arguments, leading to an error message.
- The output of the Reverse Complement Sequence tool now gets the suffix -RC attached to the name of the input instead of -1 before.
- Fixed a bug in the Predict Secondary Structure tool when the option to calculate the partition function was selected for long molecules (>1000 nucleotides).
- Fixed an issue where one could not zoom in after zooming out fully on very large workflows.
- Fixed an issue that prevented a root folder on Windows drives from being used as a File Location.
- Fixed an issue where updating an existing installation on Windows would result in the .vmoptions file being deleted, which makes the Workbench run with the default Java configuration.
- OS X 10.7.3 or later
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